Cambridge Healthtech Institute’s 14th Annual

Strategies for Targeting Kinases

Novel Chemistries and Techniques for Studying, Modulating, and Degrading Kinases

September 25, 2023 EDT

There has been growing interest in targeting kinases such as JAK, TYK, IRAK, SIK, CDK, MEK, ERK, RTK, PLK, PI3K, ALK, MAPK, GSK, LRRK, and more for their role in neurodegeneration, inflammation, cancer, autoimmune, and other disorders. However, targeting kinases selectively and specifically has always been a challenge, as they intersect so many pathways in a cell. Cambridge Healthtech Institute’s symposium on Strategies for Targeting Kinases highlights new assays and tools that are emerging to selectively modify kinases for targeted therapy.

Monday, September 25

Pre-Conference Symposium Registration Open and Morning Coffee8:00 am

CHARACTERIZATION OF KINASES

8:50 amWelcome Remarks
8:55 am

Chairperson's Remarks

Bekim Bajrami, PhD, Senior Scientist, Chemical Biology and Proteomics, Biogen, Inc.

9:00 am

Characterization of Diverse Activities of Tau-Tubulin Kinase (TTBK) Isoforms

Bekim Bajrami, PhD, Senior Scientist, Chemical Biology and Proteomics, Biogen, Inc.

Tau-tubulin kinase 1 (TTBK1) is a CNS-specific kinase that has been implicated in the pathological phosphorylation of tau in Alzheimer's Disease (AD) and Frontotemporal Dementia (FTD). TTBK1 is a challenging therapeutic target because it shares a highly conserved catalytic domain with its homolog, TTBK2, a ubiquitously expressed kinase genetically linked to the disease spinocerebellar ataxia type 11. Unbiased identification of list of neuronal interactors and phosphorylation substrates for TTBK1 and TTBK2 highlight unique cellular pathways and functional networks that each isoform is involved in and help us understand them as distinct targets for the treatment of neurodegenerative diseases.

9:30 am

Cancers of Unmet Need: New Targets, New Drugs, and the Creation of a Biotech Startup

John Brognard, PhD, Earl Stadtman Investigator, Laboratory of Cellular & Developmental Signaling, National Cancer Institute, National Institutes of Health

Our research involves defining novel kinase drivers in 3q amplicon-positive squamous cell carcinomas and the mechanisms by which these kinases promote cancer. Our previous work has led us to focus on leucine zipper bearing kinase (LZK, also known as MAP3K13) and TRAF2- and NCK-interacting kinase (TNIK) as therapeutic targets in head and neck squamous cell carcinomas (HNSCCs) and lung squamous cell carcinomas (LSCCs).

10:00 am Continuous Assays Provide New Strategies for Targeting Kinases: Time Dependent Inhibition Characterization

Daniel Urul, PhD, Senior Scientist, AssayQuant Technologies

 

Classical assessments of compound potency are commonly employed to evaluate hit and lead compounds in early drug discovery. To avoid mischaracterization of potency, one must consider slow-onset equilibrium and time-dependent inhibition (TDI) for accurate analogue generation and quantitative assessment in downstream development. We discuss the integration of PhosphoSens®, a continuous assay format, into early-stage TDI interrogation workflows, and provide a general overview of TDI assessment.

Networking Coffee Break10:15 am

TOOLS TO EXPLORE KINASES

10:30 am

An Atlas of Substrate Specificities for the Human Serine/Threonine Kinome

Jared Johnson, PhD, Instructor, Medicine, Weill Cornell Medical College

Protein phosphorylation is a widespread PTM. Here we profiled the substrate specificity of the human Ser/Thr kinome. We used our dataset to computationally identify the kinases capable of phosphorylating any Ser/Thr site. When this approach was applied to examine cellular signaling responses to targeted inhibitors, it revealed insights into pathway complexity and compensation. Overall, these studies provide a resource for exploring the cellular effects of kinase inhibitors in great detail.

11:00 am FEATURED PRESENTATION:

Using Generative AI: Scalable 3D AI Target Discovery and Design of Potent and Selective Kinase Inhibitors

Anthony Bradley, PhD, Vice President, Design Development, Exscientia

In this talk, we show how AI can be applied and scaled using 3D structures to deliver complex property profiles. We show the analysis on the human kinome — and highlight the need for improved structural models including flexibility. Second, we demonstrate that this system, coupled with our generative design capability, can scalably produce highly potent (<100 nM) and novel starting points, which we show across 3 kinase targets. We show areas of the approach that could be further enhanced such as, for protein structure quality and highlight new avenues for developing improved selectivity in molecules.

Enjoy Lunch on Your Own11:30 am

FUNCTIONAL MODULATION OF KINASES

12:55 pm

Chairperson's Remarks

Marc Wein, MD, PhD, Associate Professor, Medicine, Harvard Medical School

1:00 pm

Salt Inducible Kinase (SIK) Biology and Pharmacology for the Treatment of Osteoporosis

Marc Wein, MD, PhD, Associate Professor, Medicine, Harvard Medical School

New pharmacologic strategies to stimulate bone formation for patients with osteoporosis are needed. Salt inducible kinases (SIKs) play key roles in mediating the effects of parathyroid hormone in target cells in bone and mineral metabolism. Intracellular cAMP signaling leads to PKA-mediated inhibition of SIK cellular function. Therefore, direct SIK inhibitors may mimic the actions of parathyroid hormone and other cAMP-linked GPCR pathways. Potent and specific small molecule SIK inhibitors may represent a promising new ‘bone anabolic’ approach for osteoporosis and related disorders.

1:30 pm

Targeting Unexplored Properties of Glycogen Synthase Kinase 3 (GSK3) for Neurotherapeutics Development

Fernanda Laezza, PhD, Graduate Program Director & Professor, Pharmacology & Toxicology, University of Texas Medical Branch at Galveston

Signaling pathways that regulate ion channel macromolecular complexes are critical for neuronal plasticity. Glycogen synthase kinase 3ß (GSK3ß) has been linked to neuronal plasticity, in a way consistent with a scaffolding role in the voltage-gated Na+ channel Nav1.6 complex. Evidence will be shown for small molecules which target GSK3ß/Nav1.6 and can modulate plasticity without impacting kinase activity. These studies are the foundation for developing new neurotherapeutic approaches towards GSK3ß.

2:00 pm

The Kinase ULK3 Oversees Epigenetic Mechanisms in Skin Cancer

Sandro Goruppi, PhD, Investigator, Cutaneous Biology Research Center, Massachusetts General Hospital and Dermatology, Harvard Medical School

ULK3 is a nuclear kinase with elevated expression in squamous cell carcinomas. ULK3 gene silencing or deletion reduces clonogenicity of human keratinocytes and SCC-derived cells. It recruits the activity of two histone arginine methyltransferases, PRMT1 and PRMT5, to specific stem cell-related and metabolism genes. Downmodulating ULK3 by RNA interference or locked antisense nucleic acids (LNAs) blunts the tumorigenic potential of SCC cells in vivo.

2:30 pm Axcelead Kinase Inhibitor Discovery Platform: Identification of Selective Inhibitors for 123 Kinases

Akito Hata, Director, Discovery Biology, Axcelead Drug Discovery Partners, Inc.

Axcelead, a spin-off from a Japanese pharmaceutical company, is a CRO with comprehensive preclinical research capabilities. Our uniqueness stems from inherited 1.5 million compound library and retaining access to legacy data prior to the company separation. Here, we present approaches that are used to discover potent and selective inhibitors for 123 protein kinases: internal protein kinase panel database, kinase-focused library for selective hit identification, and Mini Kinase Panel 46.

Networking Coffee Break2:45 pm

3:00 pm

FEATURED PRESENTATION: Use of PAK1-Specific Degraders to Bypass Toxicity while Maintaining Efficacy in Cancer

Jonathan Chernoff, MD, PhD, Director and Senior Vice President, Fox Chase Cancer Center

Inhibition of Group A PAKs by small molecules has been shown to impede the growth and survival of many kinds of cancer cells. Clinical development of PAK inhibitors has been hindered because PAK2 function is required for normal cardiovascular function. An allosteric PAK1-selective inhibitor, NVS-PAK1-1, provides a potential path forward, but has modest potency. We developed a PAK1-selective degrader based on NVS-PAK1-1 that induces selective degradation of PAK1 and displays enhanced anti-proliferative effects in PAK1-dependent, but not PAK2-dependent, cell lines. Selective PAK1 degradation may confer more potent pharmacological effects compared with catalytic inhibition, highlighting the potential advantages of PAK1-targeted degraders.

3:30 pm

Development of First-in-Class RIPK1 PROTACs to Overcome Resistance in Cancer Immunotherapies

Jin Wang, PhD, Professor, Pharmacology & Chemical Biology, Baylor College of Medicine

We developed a potent and specific RIPK1 degrader LD4172 that synergizes with anti-PD1 to trigger immunogenic cell death and significantly inhibit tumor growth in immunotherapy resistant syngeneic mouse models. The synergistic effect of LD4172 and anti-PD1 can be reversed by blocking either CD19, BAFFR, CD8, or CD40L, demonstrating that both B and T cells and their crosstalk play important roles in the antitumor immunity.


Close of Symposium4:00 pm

Dinner Short Course Registration*4:00 pm

*Premium Pricing or separate registration required. See Short Courses page for details.

Close of Day7:30 pm